Fund Accounting ExpertiseSOC 2 Aligned

Serve more nonprofits without stretching your team thin

There are 1.8 million tax-exempt organizations in the U.S. contributing $1.5 trillion to the economy – yet roughly 30% fold within a decade per NCCS/Candid data. They need firms that can keep up with fund accounting, Form 990, and grant compliance at scale.

40%Avg. Cost Savings
99.4%On-Time Delivery
3 WksTo First Deliverables
30-Day Pilot Guarantee: Full refund if not satisfied
Trusted by nonprofit-focused CPA firmsacross the U.S.
4.9/5 on Clutch
SOC 2 Aligned Security
70+ Firms Served
$12M+ Client Savings
4.9/5 on Clutch
The Nonprofit Challenge

Nonprofit clients demand specialist skills. And specialists are disappearing.

87% of CFOs report a consistent talent deficit per the CFO Pulse Survey, and accounting graduates fell 6.6% year-over-year per the AICPA. Meanwhile, 57% of nonprofits cite funding diversification as their top strategic priority – creating layered compliance demands most firms can't staff for.

Can't Find Nonprofit Accountants

Fund accounting, grant compliance, and 990 preparation require specialized skills that general hires don't have. 56% of CPA firms already outsource to fill the gap per Rosenberg Associates – and finding accountants who understand restricted vs. unrestricted funds is even harder.

Partner Time Trapped in Review

Public accounting turnover averages 15–22% annually, with 39% of young accountants leaving within 24 months per IPA data. Replacement costs hit $400–600K/year for a 50-person firm. Partners stay buried in QC loops instead of advisory work.

990 Filing Risks Threaten Client Status

Every tax-exempt organization must file Form 990 annually – and missing three consecutive years triggers automatic revocation of exempt status per the IRS. The IRS assessed $84 billion in civil penalties in 2024, with specific penalties of $20/day for failing to make 990s publicly available.

Grant Complexity Overwhelming Staff

Grant management is the most labor-intensive aspect of nonprofit accounting per Earmark CPE. Each grantor has unique budget categories, and if expenses aren't tracked properly, nonprofits may have to return grant money. Meanwhile, 94% of business spreadsheets contain errors per Frontiers of Computer Science.

What We Handle

Nonprofit accounting, executed at scale

Every service below is delivered with nonprofit-specific SOPs, fund accounting workflows, and multi-layer QC.

Fund Accounting & Bookkeeping

Nonprofit accounting requires tracking restricted vs. unrestricted funds, donor restrictions, and multiple funding sources simultaneously – traditional for-profit models don't apply. Our teams are trained on fund accounting from day one.

  • Restricted/unrestricted fund tracking
  • Donor restriction management
  • Multi-fund GL reconciliation
Learn more

Grant Compliance & Tracking

Each grantor has unique budget categories and reporting requirements. We track fund usage at the grant level, prepare compliance documentation, and ensure proper allocation – so your clients never risk returning grant money.

  • Grant-level expense tracking
  • OMB Uniform Guidance compliance
  • Grantor reporting packages
Learn more

Financial Reporting

Nonprofits must produce Statements of Financial Position, Statements of Activities, Statements of Cash Flows, plus program-level financials per PICPA guidelines. Board-ready packages with full visibility across programs and funds.

  • Statement of Financial Position
  • Statement of Activities
  • Program-level financials
Learn more

Form 990 Preparation

Form 990 is a public document – accuracy isn't optional. Our teams handle 990, 990-EZ, and 990-PF preparation with multi-layer review. Missing three consecutive filings triggers automatic revocation of tax-exempt status.

  • 990 / 990-EZ / 990-PF preparation
  • Schedule preparation & review
  • State charitable registration filings
Learn more

Audit & Single Audit Support

Nonprofits receiving $750K+ in federal funding must undergo single audit under Yellow Book guidelines – with the threshold increasing to $1M in September 2025 per SVA Accountants. We prepare workpapers that hold up under scrutiny.

  • Single audit workpaper prep
  • Yellow Book documentation
  • Compliance schedule assembly
Learn more

Payroll & Donor Management

Multi-program payroll processing, time allocation across grants, and donor reporting for charitable contributions and acknowledgment letters.

  • Multi-program payroll allocation
  • Grant time & expense allocation
  • Donor acknowledgment support
Learn more
Platform Expertise

We work inside your software

Our teams train on your tech stack during onboarding – no migration needed.

QuickBooks

QuickBooks Online

Certified Team
Sage Intacct

Sage Intacct Nonprofits

Certified Team
Blackbaud

Financial Edge NXT

Trained Team
Xero

Xero

Certified Team
Aplos

Aplos Fund Accounting

Trained Team
NetSuite

NetSuite

Trained Team
TaxDome

TaxDome

Trained Team
+ Any Other

+ Any Other

We'll Train
How We Specialize

Nonprofit expertise built into every layer

We don't rotate generic accountants into your nonprofit engagements. Here's how we train and how we protect.

How We Train

Compliance Mapping

We study your nonprofit clients' regulatory landscape – IRS exempt status requirements, state charitable registration, OMB Uniform Guidance – before onboarding begins. Tax compliance costs $536 billion annually per the Tax Foundation.

Sector-Trained Teams

Our accountants receive nonprofit-specific training covering fund accounting logic, restricted fund tracking, donor compliance, grant budget management, and Form 990 preparation workflows.

Custom Nonprofit SOPs

Every engagement gets nonprofit-tuned workflows for fund categorization, grant expense allocation, donor restriction tracking, and 990 schedule preparation.

Industry QC Checklists

94% of business spreadsheets contain errors per Frontiers of Computer Science. For nonprofits, errors can lead to misallocated restricted funds, grant compliance failures, and reputational damage with donors. Our QC catches them first.

How We Protect

Donor Data Protection

69 nonprofits faced direct data compromises in the first three quarters of 2023, with over 1,300 hit by indirect vendor breaches per the Identity Theft Resources Center. All team members are trained on donor data handling and confidentiality protocols.

SOC 2 + Zero Local Storage

Role-based access, encrypted connections, VPN-secured environments. No client data stored on local devices – ever. Background-verified staff with per-engagement access controls.

NDA-Backed Compliance

Every engagement backed by non-disclosure agreements with confidentiality standards aligned to nonprofit donor and grantor data protection requirements.

Internal Controls & Fraud Prevention

32% of fraud stems from lack of internal controls, and 19% from override of existing controls per the ACFE. For nonprofits handling donor funds and government grants, our layered controls protect both compliance and trust.

How It Works

Your nonprofit team in 3 weeks

A structured onboarding process built for the nonprofit sector's unique requirements.

1

Nonprofit Discovery

We map your nonprofit clients' workflows, fund structures, grant requirements, and software stack.

2

Team Selection

Accountants with nonprofit vertical training, fund accounting expertise, and 990 preparation experience.

3

SOP & Compliance Setup

Nonprofit-specific SOPs, fund tracking protocols, and QC checklists documented and trained.

4

Pilot & Scale

Start with a small batch – see the quality and compliance before scaling capacity.

Average time from discovery call to first deliverables: 3 weeks
The Numbers

U.S. nonprofit hire vs. Accountably

Scrutiny on administrative spending creates pressure to under-resource accounting and finance functions per NetSuite – leading to subpar internal controls and increased fraud risk. Organizations outsourcing report 10–30% efficiency gains and 20–30% productivity improvements per Mordor Intelligence. Here's how it compares:

FeatureU.S. Nonprofit HireAccountably
Annual Cost per Staff$75–110K (loaded)$24–32K
Nonprofit-Specific Training3–6 months ramp-upPre-trained, 3 weeks
Fund Accounting ExpertiseVaries by hireBuilt into delivery
Multi-Layer QCPartner review only4-tier QC before you see it
Backup CoverageNoneAlways-on backup
Grant Cycle ContinuityRisk with turnoverInstitutional knowledge retained
Annual Savings (per staff)$45–80K+

A 3-person nonprofit team = $135–240K+ in annual savings. That's budget freed for advisory – not overhead that donors question.

See It In Action

Real results from nonprofit-focused firms

Case Study

Cornerstone CPA Group scales nonprofit practice by 55%

Serving 60+ nonprofit clients across the Midwest, Cornerstone was turning away foundation and grant-funded organizations during 990 season. Within 6 months of partnering with Accountably, they expanded capacity while reducing delivery costs and improving grant compliance turnaround.

55%Capacity increase
$180KAnnual savings
18New clients added
99.2%On-time delivery

"Our biggest concern was finding offshore staff who understood fund accounting and grant compliance. Accountably's team delivered 990s and grant reports that required minimal review. Six months in, we've added 18 nonprofit clients we would have turned away."

David Brennan, CPAManaging Partner, Cornerstone CPA Group
Nonprofit Firm Results

What nonprofit-focused firms say

From community foundations to national nonprofits – firms trust us with their most compliance-sensitive clients.

"We handle 50+ nonprofit organizations. Accountably's team understands fund accounting and restricted fund tracking better than our previous two offshore providers combined. Grant reporting turnaround dropped by 40%."

James Morton, CPA

Managing Partner, Morton & Associates

"The donor data protection protocols sold us. With over 1,300 nonprofits hit by indirect vendor breaches in 2023, security was non-negotiable. Accountably passed our compliance review on the first attempt."

Rachel Simmons

Director of Operations, Foundation Financial Group

"We went from turning away grant-funded organizations to actively pursuing them. Accountably gave us the capacity and confidence to grow our nonprofit niche – and our CAS revenue jumped 38%."

William Park, CPA

Partner, Beacon Nonprofit Advisors

FAQ

Nonprofit-specific questions

Common questions from firms serving nonprofit organizations.

How do you handle fund accounting for nonprofits?

Our teams are trained specifically on fund accounting – tracking restricted vs. unrestricted funds, donor restrictions, and grant compliance across multiple funding sources simultaneously. Unlike traditional for-profit models, we build workflows around the unique requirements of nonprofit financial management per KarmaSuite and Earmark CPE guidelines.

Can your team prepare Form 990 returns?

Yes. Every tax-exempt organization must file Form 990 annually – and the IRS automatically revokes exempt status after 3 consecutive missed years. The IRS assessed $84 billion in civil penalties in 2024. Our teams handle 990, 990-EZ, and 990-PF prep with multi-layer review to ensure accuracy before your final sign-off.

Do you support single audit preparation?

Absolutely. Nonprofits receiving $750K+ in federal funding must undergo single audit under Yellow Book guidelines per SVA Accountants – with the threshold increasing to $1M as of September 2025. We handle workpaper preparation, compliance documentation, and schedule assembly so your team can focus on final review.

How do you manage grant compliance and tracking?

Grant management is the most labor-intensive aspect of nonprofit accounting per Earmark CPE. Each grantor has unique budget categories and reporting requirements. We track restricted fund usage, prepare grant-level financials, and ensure proper expense allocation – because misallocated expenses can mean returning grant money.

What if we've had a bad offshore experience before?

Most bad experiences come from generic staff with no nonprofit-specific training. 32% of fraud stems from lack of internal controls per the ACFE – so we build controls into every engagement. Our 30-day pilot guarantee lets you test risk-free with full refund if quality doesn't meet your standards.

What nonprofit software do you work with?

We train on whatever your clients use – QuickBooks, Sage Intacct Nonprofits, Blackbaud Financial Edge, Aplos, NetSuite, and more. On the tax side: UltraTax, CCH Axcess, Lacerte, ProConnect, Drake, and all major platforms. 48% of nonprofit CFOs report delays in accessing financial data per Sage Intacct – our teams help close that gap.

30-Day Pilot GuaranteeFull refund if not satisfied

Scale your nonprofit practice without the risk

Get a tailored assessment for your nonprofit clients. We'll show you exactly what we can handle, how we'd fit into your workflow, and what results to expect.

Fund Accounting Expertise
3-Week Deployment
SOC 2 Aligned